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With the
same look-and-feel as ISIS/Draw, Accelrys Draw delivers speed and
efficiency to your chemical drawing experience.
Why upgrade from what you're already using?
-
Improved creation and presentation of chemical structures, biologics
and chemical aspects of biologics
-
Additional features such as multiple undo, name-to-structure,
structure-to-name conversion, molecule templates, ChemDraw file
support, InChI and Canonical SMILES support
-
An
all-purpose drawing tool that enables fast and easy structure and
reaction drawing
-
Easy-to-use Rgroup functionality
-
Multiple free add-ins to support desk top searching, file viewing,
reaction stoichiometry calculations, calculate as you draw
physicochemical properties, Markush structure enumeration, ACD lab
integration and much more...
Accelrys Draw
can easily swap out existing ISIS/Draw or ChemDraw applications.
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Hurt Locker 2008 Dual Audio H Link ((hot)) — Download The
Click
here for more details about Rgroups, an example, and a detailed
procedure how to draw a Markush query.
To draw a Markush query:
-
Draw the root structure. Use the other drawing tools.
-
Add Rgroup atom to the root structure.
- Click the
"Create Markush structure or query"v
tool.
- Click the atom that
you want to replace.
- Select an Rgroup
from the palette.
-
Draw the Rgroup members with the chemical drawing tools. Step
4 will always add an additional bond. Remove the CN bond of teh
default NO2 query.
-
Add Rgroup
members.
- Click the
"Create Markush structure or query"
tool.
- Click the fragment
that you want to add.
- Drag and drop the
fragment onto the Rgroup definition (Rn=). Try toselect the
whole group. Wait until you have a blue boy around the group.
-
(Optional)
Move attachment points.
- Click the Markush
Query tool.
- Click the asterisk
of the attachment point.
- Drag and drop the
asterisk onto the atom that you want.
-
(Optional) Change the occurence. If an
Rgroup atom appears at more than one instance (or place) in the root
structure, you see "R1 = n (where
n is defined as the number of occurences),
R2 >0, etc." appear automatically next to the Rgroup definition (Rn
=). For each such Rgroup, you need to specify the frequency
(occurrence), the number of times that a member of this Rgroup must
appear in retrieved structures. To change the frequency:
- Select the Rgroup
Query Tool.
- Click the occurence
definition (R1 = n), located next to
the Rgroup definition (Rn =).
- Select a number
from the dialog box that is displayed.
- Click
OK to accept your selection. The
frequency definition is updated with your selection.
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Generic Structure
Enumerator
The enumerator works against structures defined using the Rgroup tool in
Accelrys Draw. In this mode you specify a scaffold with a number of
Rgroup labels, then to add fragments to the Rgroup identifiers. The
Add-in will calculate the complete set of structures that the Rgroups
define.
You can also define a generic region using the Sgroup tool. Draw the
basic structure and using the Sgroup tool, drag a pair of brackets
around a region that is repeated in the substance. From the dropdown
select ‘generic’ for the bracket type, then select apply and exit from
the dialog. Right click on one of the brackets and select the Attach
Data option. In the dialog enter REPEATRANGE into the Field description
box, and then enter the range in the Data box; leave the Search Operator
set to none; the Tag field is optional. A contiguous range is required
in the Data box, for example 3-6.
A structure can contain both Rgroup definitions and Sgroup definitions,
but they cannot overlap or be nested.
You have the option to enumerate on to Accelrys Draw’s canvas, into an
SDfile, or into an Isentris for Excel compatible spreadsheet.
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http://accelrys.com/products/informatics/cheminformatics/draw/add-ins.html |
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Dr. Tamas E. Gunda
University of Debrecen, POB 70, H-4010 Debrecen, Hungary, e-mail:
Last major update : 1.11.2011
If you have any comment, do not hesitate to
contact the author at the above adress.
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http://dragon.klte.hu/~gundat/rajzprogramok/dprog.html |
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